QuickStart - Annovar
Functional annotation of genetic variants from high-thoughput sequencing data.
ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). Given a list of variants with chromosome, start position, end position, reference nucleotide and observed nucleotides, ANNOVAR can perform gene-based, region-based or filter-based annotation as well as many other functionalities.
Use Global Protect VPN: whether on or off-campus
Be sure vpn-groups selected when you connect.
Start an SSH session:
$ ssh your_netid@hpc.kennesaw.edu
Check the current version(s) available:
$ module avail Annovar
------------- /data/Apps/Modules/Software --------------
ANNOVAR/2016Feb01
Load the module
$ module load Annovar
For more information on annovar, please see http://annovar.openbioinformatics.org