QuickStart - Annovar

Functional annotation of genetic variants from high-thoughput sequencing data.

ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). Given a list of variants with chromosome, start position, end position, reference nucleotide and observed nucleotides, ANNOVAR can perform gene-based, region-based or filter-based annotation as well as many other functionalities. 


Use Global Protect VPN: whether on or off-campus

Be sure vpn-groups selected when you connect.

Start an SSH session:

$ ssh your_netid@hpc.kennesaw.edu

Check the current version(s) available:

$ module avail  Annovar

------------- /data/Apps/Modules/Software --------------
ANNOVAR/2016Feb01  

Load the module

$ module load Annovar

For more information on annovar, please see http://annovar.openbioinformatics.org

 

 

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